Max-Planck-Institut für Hirnforschung

Publikationen

Zeitschriftenartikel (865)

1.

Zeitschriftenartikel

Meier-Credo, J.; Heiniger, B.; Schori, C.; Rupprecht, F.; Michel, H.; Ahrens, C. H.; Langer, J.: Detection of Known and Novel Small Proteins in Pseudomonas stutzeri Using a Combination of Bottom-Up and Digest-Free Proteomics and Proteogenomics. Anal. Chem. (2023)

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2.

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Weber, R.; Junek, S.; Heckel, A.: A Blue Light and Two-Photon Activatable Rhodamine Fluorophore. Chemistry 29 (38), e202300997 (2023)

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3.

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Woo, T.; Liang, X.; Evans, D. A.; Fernandez, O.; Kretschmer, F.; Reiter, S.; Laurent, G.: The dynamics of pattern matching in camouflaging cuttlefish. Nature (2023)

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4.

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Ketkar, M. D.; Shao, S.; Gjorgjieva, J.; Silies, M.: Multifaceted luminance gain control beyond photoreceptors in Drosophila. Curr. Biol. 33 (13), S. 2632 - 2645.e6 (2023)

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5.

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Schuhmacher, J. S.; tom Dieck, S.; Christoforidis, S.; Landerer, C.; Gallesio, J. D.; Hersemann, L.; Seifert, S.; Schäfer, R.; Giner, A.; Toth-Petroczy, A. et al.; Kalaidzidis, Y.; Bohnsack, K. E.; Bohnsack, M. T.; Schuman, E. M.; Zerial, M.: The Rab5 effector FERRY links early endosomes with mRNA localization. Mol Cell. 83 (11), S. 1839 - 1855.e13 (2023)

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6.

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Sun, C.; Desch, K.; Nassim-Assir, B.; Giandomenico, S. L.; Nemcova, P.; Langer, J. D.; Schuman, E. M.: An abundance of free regulatory (19 S) proteasome particles regulates neuronal synapses. Science 380 (6647) (2023)

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7.

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Song, K.; Feng, Z.; Helmstaedter, M.: High-contrast en bloc staining of mouse whole-brain and human brain samples for EM-based connectomics. Nat. Methods (2023)

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8.

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Fenk, L. A.; Riquelme, J. L.; Laurent, G.: Interhemispheric competition during sleep. Nature (2023)

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9.

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Riquelme, J. L.; Hemberger, M.; Laurent, G.; Gjorgjieva, J.: Single spikes drive sequential propagation and routing of activity in a cortical network. eLife 12, e79928 (2023)

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10.

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Lu, Y.; Singer, W.: Dynamic signatures of the Eureka effect: an EEG study. Cerebral Cortex 33 (13), S. 8679 - 8692 (2023)

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11.

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Schroeder , A.; Pardi, M. B.; Keijser, J.; Dalmay, T.; Groisman, A. I.; Schuman, E. M.; Sprekeler, H.; Letzkus, J. J.: Inhibitory top-down projections from zona incerta mediate neocortical memory. Neuron (2023)

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12.

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Campagner, D.; Vale, R.; Tan, Y. L.; Iordanidou, P.; Arocas, O. P.; Claudi, F.; Stempel, A. V.; Keshavarzi, S.; Petersen, R. S.; Margrie, T. W. et al.; Branco, T.: A cortico-collicular circuit for accurate orientation to shelter during escape. Nature, S. 111 - 119 (2023)

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13.

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Verzelli, P.; Nold, A.; Sun, C.; Heilemann, M.; Schuman, E. M.; Tchumatchenko, T.: Unbiased choice of global clustering parameters for single-molecule localization microscopy. Sci. Rep. 12, 22561 (2022)

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14.

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Miehl, C.; Gjorgjieva, J.: Stability and learning in excitatory synapses by nonlinear inhibitory plasticity. PLoS Computational Biology 18 (12), e1010682 (2022)

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15.

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Sun, C.; Schuman, E. M.: Logistics of neuronal protein turnover: Numbers and mechanisms. Mol Cell Neurosci 123, 103793 (2022)

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16.

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Dörrbaum, A. R.; Schuman, E. M.; Langer, J. D.: Dynamic SILAC to Determine Protein Turnover in Neurons and Glia. Methods Mol. Biol. 2603, S. 1 - 17 (2022)

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17.

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Klimek, R.; Kaiser, C.; Murmann, N. S.; Kaltenschnee, N.; Spanò, T.; Wachtveitl, J.; Schuman, E. M.; Heckel, A.: RNA probes for visualization of sarcin/ricin loop depurination without background fluorescence. Chem. Asian J., e20220107 (2022)

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18.

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Hua, Y.; Loomba, S.; Pawlak, V.; Voit, K.-M.; Laserstein, P.; Boergens, K. M.; Wallace, D. J.; Kerr, J. N. D.; Helmstaedter, M.: Connectomic analysis of thalamus-driven disinhibition in cortical layer 4. Cell Reports 41 (2), 111476 (2022)

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19.

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Hain , D.; Gallego-Flores , T.; Klinkmann, M.; Macias, A.; Ciirdaeva, E.; Arends, A.; Thum, C.; Tushev, G.; Kretschmer, F.; Tosches, M. A. et al.; Laurent, G.: Molecular diversity and evolution of neuron types in the amniote brain. Science 377 (6610) (2022)

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20.

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Richter, L. M. A.; Gjorgjieva, J.: A circuit mechanism for independent modulation of excitatory and inhibitory firing rates after sensory deprivation. PNAS 119 (32), e2116895119 (2022)

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21.

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Loomba, S.; Straehle, J.; Gangadharan, V.; Heike, N.; Khalifa, A.; Motta, A.; Ju, N.; Sievers, M.; Gempt, J.; Meyer, H. S. et al.; Helmstaedter, M.: Connectomic comparison of mouse and human cortex. Science 377 (6602), eabo0924 (2022)

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22.

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Nassim-Assir, B.; Corredera, D. O.; Alvarez-Pardo, R.; Dieck, S. T.; Ciirdaeva, E.; Schuman, E. M.; Alvarez-Castelao, B.: Cell-type Specific Protein Purification and Identification from Complex Tissues using a Mutant Methionine tRNA Synthetase Mouse Line. J. Vis. Exp. 182 (2022)

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23.

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Bégay, V.; Cirovic, B.; Barker, A. J.; Klopfleisch, R.; Hart, D. W.; Bennett, N. C.; Lewin, G. R.: Immune competence and spleen size scale with colony status in the naked mole-rat. Open Biol 12 (4), 210292 (2022)

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24.

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Bergs, A.; Henss, T.; Glock, C.; Nagpal, J.; Gottschalk, A.: Microbial Rhodopsin Optogenetic Tools: Application for Analyses of Synaptic Transmission and of Neuronal Network Activity in Behavior. Methods Mol. Biol. 2468, S. 89 - 115 (2022)

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25.

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Gemmer, A.; Mirkes, K.; Anneser, L.; Eilers, T.; Kibat, C.; Mathuru, A.; Ryu, S.; Schuman, E. M.: Oxytocin receptors influence the development and maintenance of social behavior in zebrafish (Danio rerio). Sci. Rep. 12, 4322 (2022)

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26.

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Seidel, M.; Becker, A.; Pereira, F.; Landry, J. J. M.; de Azevedo, N. T. D.; Fusco, C. M.; Kaindl, E.; Romanov, N.; Baumbach, J.; Langer, J. D. et al.; Schuman, E. M.; Patil, K. R.; Hummer, G.; Benes, V.; Beck, M.: Co-translational assembly orchestrates competing biogenesis pathways. Nat. Commun. 13 (1224) (2022)

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27.

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Hettwer, M. D.; Lancaster, T. M.; Raspor, E.; Hahn, P. K.; Mota, N. R.; Singer, W.; Reif, A.; Linden, D. E. J.; Bittner, R. A.: Evidence From Imaging Resilience Genetics for a Protective Mechanism Against Schizophrenia in the Ventral Visual Pathway. Schizophr. Bull. 48 (3), S. 551 - 562 (2022)

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28.

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Anneser , L.; Gemmer, A.; Eilers, T.; Alcantara, I. C.; Loos, A.-Y.; Ryu, S.; Schuman, E. M.: The neuropeptide Pth2 modulates social behavior and anxiety in zebrafish. iScience 25 (3), 103868 (2022)

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29.

Zeitschriftenartikel

Perez , J.; Schuman, E. M.: Subcellular RNA-seq for the Analysis of the Dendritic and Somatic Transcriptomes of Single Neurons. Bio Protocol 12 (1), e4278 (2022)

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30.

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Kirchner, J. H.; Gjorgjieva, J.: Emergence of synaptic organization and computation in dendrites. Neuroforum (2021)

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31.

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Desch, K.; Schuman, E. M.; Langer, J. D.: Quantifying phosphorylation dynamics in primary neuronal cultures using LC-MS/MS. STAR Protocols 3 (1), 101063 (2021)

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32.

Zeitschriftenartikel

Fratzl, A.; Koltchev, A. M.; Vissers, N.; Tan, Y. L.; Marques-Smith, A.; Stempel, A. V.; Branco, T.; Hofer, S. B.: Flexible inhibitory control of visually evoked defensive behavior by the ventral lateral geniculate nucleus. Neuron 109 (23), S. 3810 - 3822 (2021)

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33.

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Basu, R.; Gebauer, R.; Herfurth, T.; Kolb, S.; Golipour, Z.; Tchumatchenko, T.; Ito, H.: The orbitofrontal cortex maps future navigational goals. Nature 599, S. 449 - 452 (2021)

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34.

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Glock, C.; Biever, A.; Tushev, G.; Nassim-Assir, B.; Kao, A.; Bartnik, I.; tom Dieck, S.; Schuman, E. M.: The translatome of neuronal cell bodies, dendrites,and axons. Proc Natl Acad Sci U S A 118 (43), e2113929118 (2021)

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35.

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Lazar, A.; Lewis, C.; Fries, P.; Singer, W.; Nikolic, D.: Visual exposure enhances stimulus encoding and persistence in primary cortex. PNAS 118 (43), e2105276118 (2021)

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36.

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Fusco, C. M.; Desch, K.; Dörrbaum, A. R.; Wang, M.; Staab, A.; Chan, I. C. W.; Vail, E.; Villeri, V.; Langer, J. D.; Schuman, E. M.: Neuronal ribosomes exhibit dynamic and context-dependent exchange of ribosomal proteins. Nat. Commun. 12, 6127 (2021)

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37.

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Schulz, A.; Miehl, C.; Berry II, M. J.; Gjorgjieva, J.: The generation of cortical novelty responses through inhibitory plasticity. eLife 10, e65309 (2021)

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38.

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Fernandes, G.; Mishra, P. K.; Sarfaraz Nawaz, M.; Donlin-Asp, P. G.; Mohammed , M. R.; Hazra, A.; Kedia, S.; Kayenaat, A.; Songara, D.; Wyllie, D. J.A. et al.; Schuman, E. M.; Kind, P. C.; Chattarji, S.: Correction of amygdalar dysfunction in a rat model of fragile X syndrome. Cell Rep. 37 (2), 109805 (2021)

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39.

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Sun , C.; Nold, A.; Fusco, C.; Rangaraju, V.; Tchumatchenko, T.; Heilemann, M.; Schuman, E. M.: The prevalence and specificity of local protein synthesis during neuronal synaptic plasticity. Sci. Adv. 7 (38), eabj0790 (2021)

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40.

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Spaulding, E. L.; Hines, T. J.; Bais, P.; Tadenev, A. L. D.; Schneider, R.; Jewett, D.; Pattavina, B.; Pratt, S. L.; Morelli, K. H.; Stum, M. G. et al.; Hill , D. P.; Gobet, C.; Pipis, M.; Reilly , M. M.; Jennings, M. J.; Horvath, R.; Bai, Y.; Shy, M. E.; Alvarez-Castelao, B.; Schuman, E. M.; Bogdanik, L. P.; Storkebaum, E.; Burgess , R. W.: The integrated stress response contributes to tRNA synthetase-associated peripheral neuropathy. Science 373 (6559), S. 1156 - 1161 (2021)

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41.

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Perez, J. D.; Fusco, C. M.; Schuman, E. M.: A Functional Dissection of the mRNA and Locally Synthesized Protein Population in Neuronal Dendrites and Axons. Annu. Rev. Genet. 55, S. 183 - 207 (2021)

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42.

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Desch, K.; Langer, J. D.; Schuman, E. M.: Dynamic bi-directional phosphorylation events associated with the reciprocal regulation of synapses during homeostatic up- and down-scaling. Cell Rep. 36 (8), 109583 (2021)

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43.

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Kirchner, J. H.; Gjorgjieva, J.: Emergence of local and global synaptic organization on cortical dendrites. Nat. Commun. 12, 4005 (2021)

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44.

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Klinger, E.; Motta, A.; Marr, C.; Theis , F. J.; Helmstaedter, M.: Cellular connectomes as arbiters of local circuit models in the cerebral cortex. Nature Communications 12, 2785 (2021)

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45.

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Lewis , C. M.; Ni, J.; Wunderle, T.; Jendritza, P.; Lazar, A.; Diester, I.; Fries, P.: Cortical gamma-band resonance preferentially transmits coherent input. Cell Reports 35 (5), 109083 (2021)

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46.

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van Leeuwen, T. M.; Sauer, A.; Jurjut, A.-M.; Wibral , M.; Uhlhaas, P.; Singer, W.; Melloni, L.: Perceptual Gains and Losses in Synesthesia and Schizophrenia. Schizophr. Bull. 47 (3), S. 722 - 730 (2021)

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47.

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Röth , K.; Shao, S.; Gjorgjieva, J.: Efficient population coding depends on stimulus convergence and source of noise. PLoS Computational Biology 17 (4), e1008897 (2021)

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48.

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Donlin-Asp, P. G.; Polisseni, C.; Klimek, R.; Heckel , A.; Schuman, E. M.: Differential regulation of local mRNA dynamics and translation following long-term potentiation and depression. Proceedings of the National Academy of Sciences (PNAS) 118 (13) (2021)

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49.

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Wosniack, M. E.; Kirchner, J. H.; Chao, L.-Y.; Zabouri, N.; Lohmann, C.; Gjorgjieva, J.: Adaptation of spontaneous activity in the developing visual cortex. eLife (10), e61619 (2021)

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50.

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Riquelme, J. L.; Gjorgjieva, J.: Towards readable code in neuroscience. Nature Reviews Neuroscience 22, S. 257 - 258 (2021)

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51.

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Barker, A. J.; Veviurko, G.; Bennett, N. C.; Hart , D. W.; Mograby, L.; Lewin, G. R.: Cultural transmission of vocal dialect in the naked mole-rat. Science 371 (6528), S. 503 - 507 (2021)

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52.

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Maldonado, P. P.; Nuno-Perez, A.; Kirchner, J. H.; Hammock, E.; Gjorgjieva, J.; Lohmann, C.: Oxytocin Shapes Spontaneous Activity Patterns in the Developing Visual Cortex by Activating Somatostatin Interneurons. Curr Biol 31 (2), S. 322 - 333 e5 (2021)

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53.

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Perez, J. D.; Tom Dieck, S.; Alvarez-Castelao, B.; Tushev, G.; Chan, I. C.; Schuman, E. M.: Subcellular sequencing of single neurons reveals the dendritic transcriptome of GABAergic interneurons. eLife 10, e63092 (2021)

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54.

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Fontinha, B. M.; Zekoll, T.; Al-Rawi, M.; Gallach , M.; Reithofer, F.; Barker, A. J.; Hofbauer, M.; Fischer, R. M.; von Haeseler, A.; Baier, H. et al.; Tessmar-Raible, K.: TMT-Opsins differentially modulate medaka brain function in a context-dependent manner. PLoS Biol. 19 (1), e3001012 (2021)

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55.

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Klimek, R.; Wang, M.; McKenney, V. R.; Schuman, E. M.; Heckel, A.: Photo-tethered molecular beacons for superior light-induction. Chem Commun (Camb) (2020)

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56.

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Barker, A. J.; Helmbrecht, T. O.; Grob, A. A.; Baier , H.: Functional, molecular and morphological heterogeneity of superficial interneurons in the larval zebrafish tectum. The Journal of Comparative Neurology 529 (9), S. 2159 - 2175 (2020)

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57.

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Anneser, L.; Alcantara, I. C.; Gemmer, A.; Mirkes, K.; Ryu, S.; Schuman, E. M.: The neuropeptide Pth2 dynamically senses others via mechanosensation. Nature 588 (7839), S. 653 - 657 (2020)

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58.

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Nold, A.; Batulin, D.; Birkner, K.; Bittner, S.; Tchumatchenko, T.: How Repair-or-Dispose Decisions Under Stress Can Initiate Disease Progression. iScience 23 (11), 101701 (2020)

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59.

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Sartori, F.; Hafner, A. S.; Karimi, A.; Nold, A.; Fonkeu, Y.; Schuman, E. M.; Tchumatchenko, T.: Statistical Laws of Protein Motion in Neuronal Dendritic Trees. Cell Rep 33 (7), S. 108391 (2020)

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60.

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Sartori, F.; Hafner, A. S.; Karimi, A.; Nold, A.; Fonkeu, Y.; Schuman, E. M.; Tchumatchenko, T.: Statistical Laws of Protein Motion in Neuronal Dendritic Trees. Cell Rep. 33 (7), 108391 (2020)

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61.

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Peter, A.; Stauch, B. J.; Shapcott, K.; Kourouplaki, K.; Schmiedt, J. T.; Klein, L.; Klon-Lipok, J.; Dowdall, J. R.; Schölvinck, M. L.; Vinck, M. et al.; Singer, W.; Schmid, M. C.; Fries, P.: Stimulus-specific plasticity of macaque V1 spike rates and gamma. bioRxiv (2020)

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62.

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Pardi, M. B.; Vogenstahl, J.; Dalmay, T.; Spanò, T.; Pu, D.-L.; Naumann, L. B.; Kretschmer, F.; Sprekeler, H.; Letzkus, J.J.: A thalamocortical top-down circuit for associative memory. Science 370 (6518), S. 844 - 848 (2020)

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63.

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van Wijngaarden, J. B.; Babl, S. S.; Ito, H.: Entorhinal-retrosplenial circuits for allocentric-egocentric transformation of boundary coding. eLife 2020 (9), e59816 (2020)

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64.

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Wu, Y.; Hengen, K.G.; Turrigiano, G.G.; Gjorgjieva, J.: Homeostatic mechanisms regulate distinct aspects of cortical circuit dynamics. Proceedings of the National Academy of Sciences of the United States of America 117 (39), S. 24514 - 24525 (2020)

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65.

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Fonkeu, Y.; Kraynyukova, N.; Hafner, A.S.; Kochen, L.; Sartori, F.; Schuman, E. M.; Tchumatchenko, T.: How mRNA localization and protein synthesis sites influence dendritic protein distribution and dynamics. Neuron 103 (6), S. 1109 - 1122 (2020)

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66.

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Hartung, J.; Letzkus, J. J.: Inhibitory plasticity in layer 1 – dynamic gatekeeper of neocortical associations. Curr. Opin.Neurobiol. 67 (April 2021), S. 26 - 33 (2020)

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67.

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Uran, C.; Peter, A.; Lazar, A.; Barnes, W.; Klon-Lipok, J.; Shapcott, K. A.; Roese, R.; Fries, P.; Singer, W.; Vinck, M.: Predictability in natural images determines V1 firing rates and synchronization: A deep neural network approach. bioRxiv (2020)

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68.

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Laurent, G.: On the value of model diversity in neuroscience. Nature Reviews Neuroscience 21 (8), S. 395 - 396 (2020)

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69.

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Spyropoulos, G.; Dowdall, J. R.; Schölvinck, M. L.; Bosman, C. A.; Lima, B.; Peter, A.; Onorato, I.; Klon-Lipok, J.; Roese, R.; Neuenschwander, S. et al.; Singer, W.; Vinck, M.; Fries, P.: Spontaneous variability in gamma dynamics described by a linear harmonic oscillator driven by noise. bioRxiv (2020)

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70.

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Siju, K. P.; Stih, V.; Aimon, S.; Gjorgjieva, J.; Portugues, R.; Grunwald Kadow, I. C.: Valence and State-Dependent Population Coding in Dopaminergic Neurons in the Fly Mushroom Body. Curr Biol 30 (11), S. 2104 - 2115 e4 (2020)

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71.

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Montangie, L.; Miehl, C.; Gjorgjieva, J.: Autonomous emergence of connectivity assemblies via spike triplet interactions. PLoS Comput Biol 16 (5), e1007835 (2020)

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72.

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Volz, C.; Breid, S.; Selenz, C.; Zaplatina, A.; Golfmann, K.; Meder, L.; Dietlein, F.; Borchmann, S.; Chatterjee, S.; Siobal, M. et al.; Schottle, J.; Florin, A.; Koker, M.; Nill, M.; Ozretic, L.; Uhlenbrock, N.; Smith, S.; Buttner, R.; Miao, H.; Wang, B.; Reinhardt, H. C.; Rauh, D.; Hallek, M.; Acker-Palmer, A.; Heukamp, L. C.; Ullrich, R. T.: Inhibition of Tumor VEGFR2 Induces Serine 897 EphA2-Dependent Tumor Cell Invasion and Metastasis in NSCLC. Cell Rep 31 (4), S. 107568 (2020)

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73.

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Alvarez-Castelao, B.; Tom Dieck, S.; Fusco, C. M.; Donlin-Asp, P.; Perez, J. D.; Schuman, E. M.: The switch-like expression of heme-regulated kinase 1 mediates neuronal proteostasis following proteasome inhibition. Elife 9, e52714 (2020)

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74.

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Dorrbaum, A. R.; Alvarez-Castelao, B.; Nassim-Assir, B.; Langer, J. D.; Schuman, E. M.: Proteome dynamics during homeostatic scaling in cultured neurons. eLife 9, e52939 (2020)

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75.

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Field, R. E.; D'Amour J, A.; Tremblay, R.; Miehl, C.; Rudy, B.; Gjorgjieva, J.; Froemke, R. C.: Heterosynaptic Plasticity Determines the Set Point for Cortical Excitatory-Inhibitory Balance. Neuron 106 (5), S. 842 - 854 e4 (2020)

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76.

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Onasch, S.; Gjorgjieva, J.: Circuit Stability to Perturbations Reveals Hidden Variability in the Balance of Intrinsic and Synaptic Conductances. J Neurosci 40 (16), S. 3186 - 3202 (2020)

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77.

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Karimi, A.; Odenthal, J.; Drawitsch, F.; Boergens, K. M.; Helmstaedter, M.: Cell-type specific innervation of cortical pyramidal cells at their apical dendrites. eLife 9, e46876 (2020)

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78.

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Shahar, O. D.; Schuman, E. M.: Large-scale cell-type-specific imaging of protein synthesis in a vertebrate brain. Elife 9, e50564 (2020)

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79.

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Norimoto, H.; Fenk, L. A.; Li, H. H.; Tosches, M. A.; Gallego-Flores, T.; Hain, D.; Reiter, S.; Kobayashi, R.; Macias, A.; Arends, A. et al.; Klinkmann, M.; Laurent, G.: A claustrum in reptiles and its role in slow-wave sleep. Nature 578 (7795), S. 413 - 418 (2020)

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80.

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Dimitriadis, G.; Neto, J. P.; Aarts, A.; Alexandru, A.; Ballini, M.; Battaglia, F.; Calcaterra, L.; Chen, S.; David, F.; Fiáth, R. et al.; Frazao, J.; Geerts, J. P.; Gentet, L. J.; Van Helleputte, N.; Holzhammer, T.; van Hoof, C.; Horváth, D.; Lopes, G.; Lopez, C. M.; Maris, E.; Marque-Smith, A.; Márton, G.; McNaughton, B. L.; Meszéna, D.; Mitra, S.; Musa, S.; Neves, H.; Nogueira, J.; Orban, G. A.; Pothof, F.; Putzeys, J.; Raducanu, B.; Ruther, P.; Schroeder, T.; Singer, W.; Steinmetz, N. A.; Tiesinga, P.; Ulbert, I.; Wang, S.; Welkenhuysen, M.; Kampff, A. R.: Why not record from every electrode with a CMOS scanning probe? bioRxiv (2020)

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81.

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Reiter, S.; Laurent, G.: Visual perception and cuttlefish camouflage. Current Opinion in Neurobiology 60, S. 47 - 54 (2020)

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82.

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Biever, A.; Glock, C.; Tushev, G.; Ciirdaeva, E.; Dalmay, T.; Langer, J. D.; Schuman, E. M.: Monosomes actively translate synaptic mRNAs in neuronal processes. Science 367 (6477), eaay4991 (2020)

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