Publications

Ye, Z.; Shelton, A. M.; Shaker, J. R.; Boussard, J.; Colonell, J.; Birman, D.; Manavi, S.; Chen, S.; Windolf, C.; Hurwitz, C. et al.; Yu, H.; Namima, T.; Pedraja, F.; Weiss, S.; Raducanu, B. C.; Ness, T. V.; Jia, X.; Mastroberardino, G.; Rossi, L. F.; Carandini, M.; Häusser, M.; Einevoll, G. T.; Laurent, G.; Sawtell, N. B.; Bair, W.; Pasupathy, A.; Lopez, C. M.; Dutta, B.; Paninski, L.; Siegle, J. H.; Koch, C.; Olsen, S. R.; Harris, T. D.; Steinmetz, N. A.: Ultra-high-density Neuropixels probes improve detection and identification in neuronal recordings. Neuron 113 (23), pp. 3966 - 3982.e12 (2025)

Mineev, K. S.; Gande, S. L.; Wenzel, A.; Linhard, V.; Andrews-Clark, H.; Witt, K.; Köster, S.; Segarra, M.; McDowell, M. A.; Acker-Palmer, A. et al.; Schwalbe, H.: Structural Role of Conformational Heterogeneity and Juxtamembrane Regions in the Ephrin A1 Interactions With the EphA2 Receptor Ligand-binding Domain. J Mol Biol. 437 (24), 169454 (2025)

Kaulich, E.; Waselenchuk, Q.; Fürst, N.; Desch, K.; Mosbacher, J.; Ciirdaeva, E.; Juengling, M.; Ray, R.; Nassim-Assir, B.; Tushev, G. et al.; Langer, J. D.; Schuman, E. M.: An integrated transcriptomic and proteomic map of the mouse hippocampus at synaptic resolution. Nature Communications 16, 7942 (2025)

Alvarez-Pardo, R.; tom Dieck, S.; Desch, K.; Nassim-Assir, B.; Olmedo Salinas, C.; Sivakumar, R. S.; Langer, J. D.; Schuman, E. M.; Alvarez-Castelao, B.: Cell type-specific in vivo proteomes with a multicopy mutant methionyl tRNA synthetase mouse line. LabAnimal (2025)

Fusco, C. M.; Staab, A.; Bourke, A. M.; Tushev, G.; Desch, K.; Moreto Lins, E.; Ciirdaeva, E.; tom Dieck, S.; Kaltenschnee, N.; Heckel, A. et al.; Langer, J. D.; Schuman, E. M.: Neuronal processes contain the essential components for the late steps of ribosome biogenesis. Proceedings of the National Academy of Sciences of the United States of America 122 (31), e2502424122 (2025)

Ukrow, J.; Renard, M. D. M.; Moghimi, M.; Laurent, G.: A computational pipeline to track chromatophores and analyze their dynamics. eLife 14, RP106509 (2025)

Rademacher, J.; Grent-'t-Jong, T.; Rivolta, D.; Sauer, A.; Scheller, B.; Gonzalez-Burgos, G.; Metzner, C.; Uhlhaas, P. J.: Computational modeling of ketamine-induced changes in gamma-band oscillations: The contribution of parvalbumin and somatostatin interneurons. PLOS Computational Biology 21 (6), e1013118 (2025)

Grijseels, D. M.; Banqueri, M.; Iyer, K.; Hanlin, L.; Ortiz Alvarez de la Campa, M.; Pagliaccio, D.; Rajaraman, B. K.; Schechtman, E.: Ten simple rules for queer data collection and analysis by STEM researchers. PLOS Computational Biology 21 (5), e1013091 (2025)

Singer, W.: The Mind-Matter Dichotomy: A Persistent Challenge for Neuroscientific and Philosophical Theories. European Journal of Neuroscience 61 (10), e70143 (2025)

Bartölke, R.; Nießner, C.; Reinhard, K.; Wolfrum, U.; Meimann, S.; Bolte, P.; Feederle, R.; Mouritsen, H.; Dedek, K.; Peichl, L. et al.; Winklhofer, M.: Full-Length Cryptochrome 1 in the Outer Segments of the Retinal Blue Cone Photoreceptors in Humans and Great Apes Suggests a Role Beyond Transcriptional Repression. Faseb Journal 39 (8), e70523 (2025)

Petkova, M. D.; Schuhknecht, G. F. P.: A map of neural signals and circuits traces the logic of brain computation. Nature 640, pp. 319 - 321 (2025)

Kirchner, J. H.; Euler, L.; Fritz, I.; Ferreira Castro, A.; Gjorgjieva, J.: Dendritic growth and synaptic organization from activity-independent cues and local activity-dependent plasticity. eLife 12, RP87527 (2025)

Avaroth Bhaskaran, R.; Vondráčková, Z.; Koladiya, A.; Čapek, M.; Dionigi, F.; Begall, S.; Burda, H.; Peichl, L.; Němec, P.: Distinct retinal ganglion cell types in strictly subterranean, naturally microphthalmic mammals. Proc. R. Soc. B 292 (2038), 20242586 (2025)

Helmstaedter, M.: Synaptic-resolution connectomics: towards large brains and connectomic screening. Nat. Rev. Neurosci. (2025)

Helmstaedter, M.: Synaptic-resolution connectomics: towards large brains and connectomic screening. Nat Rev Neurosci 27, pp. 101 - 126 (2025)

Brand, P.; Coleman, R. T.: From neurons to novelty: Circuit mechanisms shaping courtship evolution. Curr. Opin.Neurobiol. 95, 103137 (2025)

van Oostrum, M.; Schuman, E. M.: Understanding the molecular diversity of synapses. Nat Rev Neurosci 26, pp. 65 - 81 (2025)

Brand, P.; Keller, K.; Coleman, R. T.; Eghbali, N. B.; Zylka, S.; Prieto-Godino, L.; Ruta, V.: Ecological cues orchestrate concerted courtship in a Drosophila host specialist. (2025)

Vohra, S. K.; Eberle, M.; Boulanger-Weill, J.; Petkova, M. D.; Schuhknecht, G. F. P.; Herrera, K. J.; Kämpf, F.; Ruetten, V. M. S.; Lichtman, J. W.; Engert, F. et al.; Randlett, O.; Bahl, A.; Isoe, Y.; Hege, H.-C.; Baum, D.: Fishexplorer: A multimodal cellular atlas platform for neuronal circuit dissection in larval zebrafish. (2025)

Petkova, M. D.; Januszewski, M.; Blakely, T.; Herrera, K. J.; Schuhknecht, G. F. P.; Tiller, R.; Choi, J.; Schalek, R. L.; Boulanger-Weill, J.; Peleg, A. et al.; Wu, Y.; Wang, S.; Troidl, J.; Vohra, S. K.; Wei, D.; Lin, Z.; Bahl, A.; Tapia, J. C.; Iyer, N.; Miller, Z. T.; Hebert, K. B.; Pavarino, E. C.; Taylor, M.; Deng, Z.; Stingl, M.; Hockling, D.; Hebling, A.; Wang, R. C.; Zhang, L. L.; Dvorak, S.; Faik, Z.; King Jr, K. I.; Goel, P.; Wagner-Carena, J.; Aley, D.; Chalyshkan, S.; Contreas, D.; Li, X.; Muthukumar, A. V.; Vernaglia, M. S.; Carrasco, T. T.; Melnychuck, S.; Yan, T.; Dalal, A.; DiMartino, J. M.; Brown, S.; Safo-Mensa, N.; Greenberg, E.; Cook, M.; Finley-May, S.; Flynn, M. A.; Hopkins, G. P.; Kovalyak, J.; Leonard, M.; Lohff, A.; Ordish, C.; Scott, A. L.; Takemura, S.; Walsh, C.; Walsh, J. J.; Berger, D. R.; Pfister, H.; Berg, S.; Knecht, C.; Meissner, G. W.; Korff, W.; Ahrens, M. B.; Jain, V.; Lichtman, J. W.; Engert, F.: A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain. (2025)

Boulanger-Weill, J.; Kämpf, F.; Schuhknecht, G. F. P.; Schalek, R. L.; Petakova, M.; Vohra, S. K.; Wu, Y.; Savaliya, J. H.; Tiller, R.; Herrera, K. J. et al.; Naumann, H.; Eberle, M.; Rencken, S.; Stingl, M.; Hebling, A.; Hockling, D.; Slangewal, K.; Deng, Z.; Wang, R. C.; Zhang, L. L.; Kirchberger, K. N.; Bianco, I. H.; Baum, D.; Del Bene, F.; Engert, F.; Lichtman, J. W.; Bahl, A.: Correlative light and electron microscopy reveals the fine circuit structure underlying evidence accumulation in larval zebrafish. (2025)